PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 762aa    MW: 84767.5 Da    PI: 6.4592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.7e-06230249525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C f+ar G+C  G++CkF H
  PEQU_06271 230 ICVFYAR-GWCIKGNSCKFLH 249
                 6999***.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.925225252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6226250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MSLRRERGRE RRRVKKMRSK NLKRWKREEE GEQEEEVAVM VEEREGGAEV VEEEEMVMED  60
ESMGKGEEET GVISADTASA MPEDAEGVGA GFSTVVSEHI KSEENGIPEI LLSETCKGIQ  120
LDKEITKESP VHVNNNCLET QESHHLLGSD NSGSLQLQKN DSSVEDGVIN ESKIVKNNVS  180
EKGESHLHEK TNSQVLEDLI FTCGHSPRRR PRSSSPGSEP DRTNKRLAGI CVFYARGWCI  240
KGNSCKFLHQ KDGVNKIEQQ TIEDTAGSNR SADSLATTGS DEINERSKVS SELLESNPKG  300
SSGCNSLLNR ALVRTYGTGS HVTSPGHTST QEEYKKPIGK MGHFESNVER QSDDAFLSRR  360
HLTEGKALNE ISMNDSPYER TISGRTHPAD AFVSDPKHYP GSSSISSILQ HNNNSPPAYG  420
RTEGNAIRST QSHFLKQESY DSHGFAGSLS SGLGSSFQLP QMDYMLSRAG PSPASGSTRN  480
TEYVEGHSFL DLHRRYHSSG SISLTRDSSP YLSQPELRNK IHHNISGDLT LRQTTKIQYD  540
AWEPSQPFRS SLAIATKSTS SPSQYDPILD SIEPATANDR DYFQTSQITP FQNSSFLPTK  600
TENAISWDGM PSRNVSLHDS SAQDEFFTSI KLEGRNNSLL NNEKTWNSDR LVERSDNKDA  660
ELGAEWKAID KGRNIKESKA LKIFHTALVD FVKELLKPWW REGQLSKDAH KTVVKKSVEK  720
VLSALHSHQI PSTQEAINQY LASSRQKILK LVDGYAQKHA NS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420KKMRSKN
2206212PRRRPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-22C3H family protein